ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTGATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
AAAAAAAAAGAGTTTGTTAGAGAATAAGGAGCGAAAGATGCTGGAGGCAGCGGTTGATCGATCTCTTTGTGGGAAATTTTGGAAAAAAAAACTCAAAGCA
TGAACAGATCGATAAACCTCTGCATCCAGCGGTCGCCACTTTATCACTCGTACTTTTAATCCGTTTTA
dot-bracket secondary structure
.......((((((......(((.((((((.((((....(((((((.((((.((((.((((((((.((((((.((..((((....))))....))....))
)))).)))))))).)))).)))).))))))).))))..))))))..)))..))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAAAAAAAGAGTTTGTTAGAGAATAAGGAGCGAAAGATGCTGGAGGCAGCGGTTGATCGATCTCTTTGTGGGAAATTTTGGAAAAAAAAACTCAAAGCA
TGAACAGATCGATAAACCTCTGCATCCAGCGGTCGCCACTTTATCACTCGTACTTTTAATCCGTTTTA
dot-bracket secondary structure
.......((((((......(((.((((((.((((....(((((((.((((.((((.((((((((.((((((.((..((((....))))....))....))
)))).)))))))).)))).)))).))))))).))))..))))))..)))..))))))...........
SIMILARITIES| miRBase aly-MIR162a: 0.0000000000006 PMRD ath-miR162a: 0.000000000009 microPC miR162: 0.0000000001 | UniProt no hits RFAM MIR162_2: 1e-17 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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