ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGATG miRNA* TCAATGTTGGCTCAATTATG mismatches: 1 bulges: 1 |
pre-miRNA
TTTGAATGAACATCATTGAGTGCAGCGTTGATGTGATTTACTTTTTTTTATTGTTGAATGGATTAAAGCAATTTACATCAATGTTGGCTCAATTATGTTT
TTCTGA
dot-bracket secondary structure
...(((.((((((.(((((((.((((((((((((((.((.((((..((((((....))))))..)))).)).))))))))))))))))))))).))))))
)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTGAATGAACATCATTGAGTGCAGCGTTGATGTGATTTACTTTTTTTTATTGTTGAATGGATTAAAGCAATTTACATCAATGTTGGCTCAATTATGTTT
TTCTGA
dot-bracket secondary structure
...(((.((((((.(((((((.((((((((((((((.((.((((..((((((....))))))..)))).)).))))))))))))))))))))).))))))
)))...
SIMILARITIES| miRBase bna-MIR397b: 2e-24 PMRD bna-miR397b: 2e-24 microPC miR397: 0.00008 | UniProt no hits RFAM MIR397: 5e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
