ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCTTCCTCTTCCTCTTCGT miRNA* GTGGCGGAGGAGGTAGAAGAC mismatches: 5 bulges: 0 |
pre-miRNA
AATGCCTTCTCTCTCTTCCTCTTCCTCTTCGTCGATGGTTTTTTTTTGGTTTGAGAAAGAGAGCTTCGTCGATTTTGATCGAGAAATTATCTCTTCTCCT
TCTCTCTCCCTCACCGTCTCGTCTCATCTCTCTCTATCGTTCACCGGAATCTACCTCTATGTTGCCTTCGCTCTCCGCTTTCACCCGGACCCGACCCGAT
AGAATCCGAGTATCCACCGCCGAAGAAACCGCCGACGTGGCGGAGGAGGTAGAAGACGGTCCTGT
dot-bracket secondary structure
...(((.(((...(((.((((((((.((.(((((.((((((((((.((((.(((((..((((..............((..(((((........)))))..
))..............)))).))))).(((..(((((((.((.((((................((....)).............))))....))..))))
)))....))).....))))..)))))))))).))))).)).)))))))).)))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATGCCTTCTCTCTCTTCCTCTTCCTCTTCGTCGATGGTTTTTTTTTGGTTTGAGAAAGAGAGCTTCGTCGATTTTGATCGAGAAATTATCTCTTCTCCT
TCTCTCTCCCTCACCGTCTCGTCTCATCTCTCTCTATCGTTCACCGGAATCTACCTCTATGTTGCCTTCGCTCTCCGCTTTCACCCGGACCCGACCCGAT
AGAATCCGAGTATCCACCGCCGAAGAAACCGCCGACGTGGCGGAGGAGGTAGAAGACGGTCCTGT
dot-bracket secondary structure
...(((.(((...(((.((((((((.((.(((((.((((((((((.((((.(((((..((((..............((..(((((........)))))..
))..............)))).))))).(((..(((((((.((.((((................((....)).............))))....))..))))
)))....))).....))))..)))))))))).))))).)).)))))))).)))))).))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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