ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIRf102
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGAATATACCGACGGAATTC miRNA* AATCCGTCGGAATATTCCGAG mismatches: 5 bulges: 0 |
pre-miRNA
AGCACAAAATTGGGTTTCCTCGGAATTTTCTCGGAATATACCGACGGAATTCCGAGAAAATATCAATCCGTCGGAATATTCCGAGGAAATTCCGAGGAAA
AATGTGTTCCTCG
dot-bracket secondary structure
.(((((........(((((((((((((((((((((((((.((((((((..................)))))))).)))))))))))))))))))))))))
..)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCACAAAATTGGGTTTCCTCGGAATTTTCTCGGAATATACCGACGGAATTCCGAGAAAATATCAATCCGTCGGAATATTCCGAGGAAATTCCGAGGAAA
AATGTGTTCCTCG
dot-bracket secondary structure
.(((((........(((((((((((((((((((((((((.((((((((..................)))))))).)))))))))))))))))))))))))
..)))))......
SIMILARITIES| miRBase no hits PMRD ptc-miRf11682-akr: 0.00009 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
