ABOUT THIS RECORDspecies: Oreochromis niloticus
miRNA family: let-7
source: miRNEST
Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGTTTGTGCT miRNA* CGCAATCTACTGCCTTGCC mismatches: 2 bulges: 0 |
pre-miRNA
GGGTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTCATATTACCCCTTGTGGAGATGACTGCGCAATCTACTGCCTTGCC
dot-bracket secondary structure
.(((((((((((((.((((((.((((.((((((.((...)).)))).....))...)))).)))))).)))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTCATATTACCCCTTGTGGAGATGACTGCGCAATCTACTGCCTTGCC
dot-bracket secondary structure
.(((((((((((((.((((((.((((.((((((.((...)).)))).....))...)))).)))))).)))))))))))))
SIMILARITIES| miRBase gga-let-7i: 1e-21 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 6e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
