ABOUT THIS RECORDspecies: Oreochromis niloticus
miRNA family: mir-1
source: miRNEST
Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGT miRNA* ATACTTCTTTATGTACCCATA mismatches: 1 bulges: 1 |
pre-miRNA
TCCTTGGTGCACATACTTCTTTATGTACCCATATGAACATATGATAGCTATGGAATGTAAAGAAGTATGTATTCTTGGT
dot-bracket secondary structure
.((..((...((((((((((((((((..(((((...............))))).))))))))))))))))..))..)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCTTGGTGCACATACTTCTTTATGTACCCATATGAACATATGATAGCTATGGAATGTAAAGAAGTATGTATTCTTGGT
dot-bracket secondary structure
.((..((...((((((((((((((((..(((((...............))))).))))))))))))))))..))..)).
SIMILARITIES| miRBase tni-mir-1: 2e-32 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 3e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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