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ABOUT THIS RECORD

ID: MNEST008733
species: Oreochromis niloticus
miRNA family: mir-1
source: miRNEST

Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAATGTAAAGAAGTATGT

miRNA*
ATACTTCTTTATGTACCCATA

mismatches: 1
bulges: 1

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pre-miRNA
TCCTTGGTGCACATACTTCTTTATGTACCCATATGAACATATGATAGCTATGGAATGTAAAGAAGTATGTATTCTTGGT

dot-bracket secondary structure
.((..((...((((((((((((((((..(((((...............))))).))))))))))))))))..))..)).


SIMILARITIES
miRBase tni-mir-1: 2e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1: 3e-28
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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