ABOUT THIS RECORDspecies: Oreochromis niloticus
miRNA family: miR-1603
source: miRNEST
Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGTTTGTTTTTTGTTTTTT miRNA* AAGACAAAATAAAACCACTC mismatches: 3 bulges: 1 |
pre-miRNA
CATTAGCAGTTAAAGACAAAATAAAACCACTCAAATGCAGTCAGGCCTTTGTACCCAGGTAAGGAACCTGCCCAGATTTAAATGTGGTTTGTTTTTTGTT
TTTTTTGTTTTTT
dot-bracket secondary structure
.....((((..((((((((((..(((((((..((((((((((..((((........))))...))..))))....))))....)))))))...)))))))
))).)))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CATTAGCAGTTAAAGACAAAATAAAACCACTCAAATGCAGTCAGGCCTTTGTACCCAGGTAAGGAACCTGCCCAGATTTAAATGTGGTTTGTTTTTTGTT
TTTTTTGTTTTTT
dot-bracket secondary structure
.....((((..((((((((((..(((((((..((((((((((..((((........))))...))..))))....))))....)))))))...)))))))
))).)))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
