ABOUT THIS RECORDspecies: Taeniopygia guttata
miRNA family: miR-181b
source: miRNEST
Taxonomy by NCBI:
Taeniopygia guttata Taeniopygia Estrildinae Estrildidae Passeroidea Passeriformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCACTGAACAATGAATGCAA miRNA* ACATTCATTGCTGTCGGTGGGTT mismatches: 4 bulges: 2 |
pre-miRNA
ATATGATGTTTCTCCCTCACCCTGCCAAGCTTTACAAAAAGGTCACAATGAACATTCATTGCTGTCGGTGGGTTTAACTATGTGGACAAGCTCACTGAAC
AATGAATGCAACTGTGGCCCCACATTGTGCAGTTGCCGTTGAGAGGAGCAGCAGCTCTG
dot-bracket secondary structure
......((((.((((((((....((..((((.(((((...(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)
))))))))....))))))).....))))).))))))...)))).)))).))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATATGATGTTTCTCCCTCACCCTGCCAAGCTTTACAAAAAGGTCACAATGAACATTCATTGCTGTCGGTGGGTTTAACTATGTGGACAAGCTCACTGAAC
AATGAATGCAACTGTGGCCCCACATTGTGCAGTTGCCGTTGAGAGGAGCAGCAGCTCTG
dot-bracket secondary structure
......((((.((((((((....((..((((.(((((...(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)
))))))))....))))))).....))))).))))))...)))).)))).))))......
SIMILARITIES| miRBase gga-mir-181b-1: 8e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-181: 0.0000002 | most similar mature miRNAs |
Identical with: tgu-mir-181b-1 from miRBase (MNEST026485) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
