ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR529
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTCACCTCTCTCTTCTTTC miRNA* GAGAAGGGAAAGATAAAGAAAT mismatches: 4 bulges: 1 |
pre-miRNA
AGCAGAAGAAGAGAGAAGGGAAAGATAAAGAAATGAAATCCCTGCCTAACCCTCTCAAAGTAATATCCTTGAAAGTTTCAGAAGAGGTTACAGGGATGCT
TCTCACCTCTCTCTTCTTTCTTATTAACA
dot-bracket secondary structure
.....((.(((((((((((((.((....((((.....(((((((..(((((.(((.(((.(((.....)))....))).)))...))))))))))))..)
)))...)).))))))))))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCAGAAGAAGAGAGAAGGGAAAGATAAAGAAATGAAATCCCTGCCTAACCCTCTCAAAGTAATATCCTTGAAAGTTTCAGAAGAGGTTACAGGGATGCT
TCTCACCTCTCTCTTCTTTCTTATTAACA
dot-bracket secondary structure
.....((.(((((((((((((.((....((((.....(((((((..(((((.(((.(((.(((.....)))....))).)))...))))))))))))..)
)))...)).))))))))))))).))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
