ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf1302
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCTCCAGCTGCTTGAGCGG miRNA* GCTCAAGCAGCTGCAGATCCA mismatches: 2 bulges: 0 |
pre-miRNA
AGCGAATCCAGCATCTCCAGCTGCTTGAGCGGCGGCAGGGATGGCTCCAGTTGCTCGAGGAGCGGCGGCTGCTCAAGCAGCTGCAGATCCATTGGATTT
dot-bracket secondary structure
...((((((((.((((.((((((((((((((((....(((.....))).(((((((...))))))).)))))))))))))))).))))...))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCGAATCCAGCATCTCCAGCTGCTTGAGCGGCGGCAGGGATGGCTCCAGTTGCTCGAGGAGCGGCGGCTGCTCAAGCAGCTGCAGATCCATTGGATTT
dot-bracket secondary structure
...((((((((.((((.((((((((((((((((....(((.....))).(((((((...))))))).)))))))))))))))).))))...))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12466-akr: 2e-33 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
