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ABOUT THIS RECORD
ID:
MNEST008835
species:
Populus trichocarpa
miRNA family:
MIRf877
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGGATTATGCTGCTGTGGTGG
miRNA*
ACTACTATAGCTTAATTTCTT
mismatches:
4
bulges:
0
View larger
pre-miRNA
AATAGGTAGATT
ACTACTATAGCTTAATTTCTT
ACTGATCATGATTACTTGCACCAGTAGTACTCTCTGGTGGTGCTTGTGCTGGCATCAGGGAAGC
AGG
ATTATGCTGCTGTGGTGG
TCTCTTTCT
dot-bracket secondary structure
...(((.(((((
(((((..((((.(((((((((
.(((((..((..(((..((((((.(((......))).))))))..))).))..)))))..))).
.))
)))).))))..)))))))
)))...)))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10528-akr
:
3e-29
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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