ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf907
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGCAGGTTTTGCATGCTCT miRNA* GGGCATGCACTCTTGTTGCCA mismatches: 2 bulges: 2 |
pre-miRNA
CCTTGCATAACATGGGCATGCACTCTTGTTGCCATAGGTACCTGGTGGAACACACCGGCATCTGTTGCAGCAGGTTTTGCATGCTCTGTGGCATAC
dot-bracket secondary structure
)..(((...(((.(((((((((..((((((((.((((((.((.((((.....)))))).)))))).))))))))...)))))))))))).)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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CCTTGCATAACATGGGCATGCACTCTTGTTGCCATAGGTACCTGGTGGAACACACCGGCATCTGTTGCAGCAGGTTTTGCATGCTCTGTGGCATAC
dot-bracket secondary structure
)..(((...(((.(((((((((..((((((((.((((((.((.((((.....)))))).)))))).))))))))...)))))))))))).)))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf10626-akr: 5.0E-46 microPC no hits | UniProt sp|P46689|GASA1_ARATH: 7.0E-10 RFAM no hits | most similar mature miRNAs |
Identical with: ptc-miRf10626-akr from PMRD (MNEST052448) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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