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ABOUT THIS RECORD

ID: MNEST008847
species: Populus trichocarpa
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GATTTACTTACCGGCGGTCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAA
AAGAAAAGGAAGGAAACAGGAAAAAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCAGAA

dot-bracket secondary structure
.......((((((.((((((((((((((.((((((((((.(((((.((((((((.(.((((....((((((((......)))..)))))..((((.....
...........................)))).)))).))))))))).))))).)))))))))).)))))))))))))))))))).......


SIMILARITIES
miRBase ptc-MIR168a: 9e-40

PMRD ptc-miR168a: 9e-40

microPC miR168: 9e-34		UniProt no hits

RFAM MIR168: 3e-43		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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