miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST008848
species: Populus trichocarpa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCTG

miRNA*
 GCAAGTGTCCTTGGCTAAC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 AAGGAAGGTACTGAAGAGAGATCCAACATGAAGATAAAGAGTCTTGTTTGGTAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCAAGAACACGAG
CATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCGCGCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGC
TAGAATCCTCATGAGGTTCACAGCAAGTGTCCTTGGCTAACGAGACGGGCTCTTATCTTTCATGTTGGATCTGTTCTTCGTGTGCTCTG

dot-bracket secondary structure
......(((((((((((((((((((((((((((((((.((((((..((((.(((((((((((.((((((.(((((((((....((((((.((..(((..(
((....))).)))(((..........))).((((.(((....((((((((...(((...((.....)).)))..)))))))).....))).))))....)
).))))))....)))))).)))))))))))))))))))).))))..))))))))))).)))))))))))))).))))))).)))))...


SIMILARITIES
miRBase ptc-MIR169k: 1e-76

PMRD ptc-miR169k: 1e-76

microPC miR169: 1e-104		UniProt no hits

RFAM MIR169_2: 2e-79		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;