ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGGCCTTGGGTCACATG mismatches: 3 bulges: 0 |
pre-miRNA
ATGATTGTAAAAGGGTTCCGACAGGAGCGGCCTTGGGTCACATGCGGCGGCATCCAATGTACTTCATGTGTTCTCAGGTCGCCCCTGCCGGGCTTCCTCT
ACATGAT
dot-bracket secondary structure
.....((((..((((.((((.((((.(((((((.(((.((((((.((..((((...)))).)).)))))).))).))))))).)))).))))..)))).)
)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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ATGATTGTAAAAGGGTTCCGACAGGAGCGGCCTTGGGTCACATGCGGCGGCATCCAATGTACTTCATGTGTTCTCAGGTCGCCCCTGCCGGGCTTCCTCT
ACATGAT
dot-bracket secondary structure
.....((((..((((.((((.((((.(((((((.(((.((((((.((..((((...)))).)).)))))).))).))))))).)))).))))..)))).)
)))....
SIMILARITIES| miRBase ptc-MIR398b: 1e-40 PMRD ptc-miR398b: 1e-40 microPC miR398: 0.0000003 | UniProt no hits RFAM MIR398: 6e-40 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
