ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACGGGGAACAGGCAGAGCATG mismatches: 3 bulges: 0 |
pre-miRNA
ACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGCT
dot-bracket secondary structure
.......(((.(((((((.((((((.((((((.((((((((..(((((......))))).)))))))).)))))).)))))).))))))).)))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGCT
dot-bracket secondary structure
.......(((.(((((((.((((((.((((((.((((((((..(((((......))))).)))))))).)))))).)))))).))))))).)))......
SIMILARITIES| miRBase ptc-MIR408: 5e-52 PMRD ptc-miR408: 5e-52 microPC miR408: 5e-43 | UniProt no hits RFAM MIR408: 9e-51 | most similar mature miRNAs |
Identical with: miR408 from microPC (MNEST046505) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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