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ABOUT THIS RECORD

ID: MNEST008854
species: Populus trichocarpa
miRNA family: MIRf1205
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCAGAGCATGGATGGAGCTA

miRNA*
GCTCTACCCATGCACTGCCTC

mismatches: 2
bulges: 0

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pre-miRNA
GACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGC
TC


dot-bracket secondary structure
........(((.(((((((.((((((.((((((.((((((((..(((((......))))).)))))))).)))))).)))))).))))))).))).....
..



SIMILARITIES
miRBase ptc-MIR408: 4e-53

PMRD ptc-miR408: 4e-53

microPC miR408: 5e-43
UniProt no hits

RFAM MIR408: 6e-52
most similar mature miRNAs

Identical with: miR408 from microPC (MNEST046505)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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