ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCTGTCTTCCCCATC mismatches: 5 bulges: 0 |
pre-miRNA
GGTGTGTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCACACAGAGTGAGAGAGACATTTCTTGCTGGAGTTATGACTCTTACCTACA
ATAGATTTTGTTGGCTTCAGCGAGTTAGTTCTTCATGTGCCTGTCTTCCCCATCATGATCACTACC
dot-bracket secondary structure
((((.((((.((.(((((.((((..(((((((((....((((((((...(((.....))).(((((....)))))((((((((((.((.(((........
..))).))...))))))))))))))))))....)))))))))..)))).))))).)).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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GGTGTGTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCACACAGAGTGAGAGAGACATTTCTTGCTGGAGTTATGACTCTTACCTACA
ATAGATTTTGTTGGCTTCAGCGAGTTAGTTCTTCATGTGCCTGTCTTCCCCATCATGATCACTACC
dot-bracket secondary structure
((((.((((.((.(((((.((((..(((((((((....((((((((...(((.....))).(((((....)))))((((((((((.((.(((........
..))).))...))))))))))))))))))....)))))))))..)))).))))).)).))))))))
SIMILARITIES| miRBase ptc-MIR164e: 8e-80 PMRD ptc-miRf11320-akr: 9e-86 microPC miR164: 7e-62 | UniProt no hits RFAM MIR164: 1e-79 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
