ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf452
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCTGGACCGGTCCGGGTTTG miRNA* CTTACCCGGGACCGGCCCGGCGGG mismatches: 4 bulges: 1 |
pre-miRNA
CTTTTTTATGTGTAAGCTTTCTTTTAAGTACTCTTACCCGGGACCGGCCCGGCGGGTTGACCCGGGACCCGGTCGACCCGGTGGCTGGACCGGTCCGGGT
TTGTTAAAAGACCGGCTAATGCAACGACCCGG
dot-bracket secondary structure
........(((((.((((.(((((((...((....((((((.(((((.((((((((((((((.((...)))))))))))....))))).)))))))))))
..)))))))))..)))).))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTTTTTTATGTGTAAGCTTTCTTTTAAGTACTCTTACCCGGGACCGGCCCGGCGGGTTGACCCGGGACCCGGTCGACCCGGTGGCTGGACCGGTCCGGGT
TTGTTAAAAGACCGGCTAATGCAACGACCCGG
dot-bracket secondary structure
........(((((.((((.(((((((...((....((((((.(((((.((((((((((((((.((...)))))))))))....))))).)))))))))))
..)))))))))..)))).))))).........
SIMILARITIES| miRBase no hits PMRD ptc-miRf10974-akr: 3e-29 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
