ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR530
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCATCTTA miRNA* AGGTGCAGGTGCAAGTGCAGG mismatches: 1 bulges: 0 |
pre-miRNA
TTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCGACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAAT
TAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGGTAAATGC
dot-bracket secondary structure
..((.((((((((((((((((((((((((((.(((.(((((..(((((((..(((.((((((((........))).)))))....)))....))))))).
))))).))).((((((.....)))))))))))))))))))))))))).)))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCGACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAAT
TAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGGTAAATGC
dot-bracket secondary structure
..((.((((((((((((((((((((((((((.(((.(((((..(((((((..(((.((((((((........))).)))))....)))....))))))).
))))).))).((((((.....)))))))))))))))))))))))))).)))))).))
SIMILARITIES| miRBase ptc-MIR530b: 2e-71 PMRD ptc-miR530b: 2e-71 microPC miR530: 4e-54 | UniProt no hits RFAM MIR530: 3e-70 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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