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ABOUT THIS RECORD

ID: MNEST008873
species: Populus trichocarpa
miRNA family: MIRf1017
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTTATCTGCATTTGCACCTG

miRNA*
 GGTGCAAGTGCAGGTGAATGCC

mismatches: 1
bulges: 1
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pre-miRNA
 ATTATGCATGCCAATATGTTGCCTTATCTGCATTTGCACCTGCATCTTATGCGTTGGTTTCGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATAC
AGTATGTGGGACAATGGACATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATGTTGGTAATGTTTTCA

dot-bracket secondary structure
.....(((((((((((((..((.((((((((((((((((((((((((((.(((((((((((.((.(((..((((((.((...(((..........)))..
.)).)))))).))).)).......)))))))))..)).....))))))))))))))))))))))))))..))))))))))).)))).....


SIMILARITIES
miRBase ptc-MIR530b: 2e-71

PMRD ptc-miR530b: 2e-71

microPC miR530: 9e-40		UniProt no hits

RFAM MIR530: 4e-70		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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