ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGCCGAATCAATATCACTC miRNA* CGTGATATTGGTCCGGCTCATC mismatches: 2 bulges: 1 |
pre-miRNA
TCTGGCCATGTTTCTGGAGAAGTAGACACGGCGTGATATTGGTCCGGCTCATCTTCTGTGCATAAGCATCTGAAGTTCTTCACTCATGAAGACGAGCCGA
ATCAATATCACTCTTGTATGCTTCTTCCCATCATCTCTAGT
dot-bracket secondary structure
.((((..(((.....(((((((((.(((.((.(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).
))))))))))))).))).)))))))))....)))..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTGGCCATGTTTCTGGAGAAGTAGACACGGCGTGATATTGGTCCGGCTCATCTTCTGTGCATAAGCATCTGAAGTTCTTCACTCATGAAGACGAGCCGA
ATCAATATCACTCTTGTATGCTTCTTCCCATCATCTCTAGT
dot-bracket secondary structure
.((((..(((.....(((((((((.(((.((.(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).
))))))))))))).))).)))))))))....)))..)))).
SIMILARITIES| miRBase ptc-MIR171l: 1e-56 PMRD ptc-miR171l: 1e-56 microPC miR171: 1e-41 | UniProt no hits RFAM MIR171_2: 6e-56 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045606) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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