ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATATAGCATCATGAGCAATCA miRNA* ACTGCTAATGATGTTATATCA mismatches: 3 bulges: 0 |
pre-miRNA
CACACAGATAGCGAAGACCGCATATAGCATCATGAGCAATCAGCCTTAGATTTGAGCAGAGTGACTGCTAATGATGTTATATCATTTTATGAAGCTCCTC
GT
dot-bracket secondary structure
..........((((.((..((.(((((((((((.((((.(((..(((...........)))))).)))).)))))))))))((((...)))).)))).))
))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CACACAGATAGCGAAGACCGCATATAGCATCATGAGCAATCAGCCTTAGATTTGAGCAGAGTGACTGCTAATGATGTTATATCATTTTATGAAGCTCCTC
GT
dot-bracket secondary structure
..........((((.((..((.(((((((((((.((((.(((..(((...........)))))).)))).)))))))))))((((...)))).)))).))
))
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 0.0000003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
