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ABOUT THIS RECORD
ID:
MNEST008878
species:
Populus trichocarpa
miRNA family:
MIRf519
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATATAGCATCATGAGCAATCA
miRNA*
ACTGCTAATGATGTTATATCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
CACACAGATAGCGAAGACCGC
ATATAGCATCATGAGCAATCA
GCCTTAGATTTGAGCAGAGTG
ACTGCTAATGATGTTATATCA
TTTTATGAAGCTCCTC
GT
dot-bracket secondary structure
..........((((.((..((
.(((((((((((.((((.(((
..(((...........)))))
).)))).)))))))))))(((
(...)))).)))).))
))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf11142-akr
:
0.0000003
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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