ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: miR-1709
source: miRNEST
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAATGATGTGTGCACTGAA miRNA* CTTTGCACCAATACTCAAA mismatches: 4 bulges: 2 |
pre-miRNA
ATACTATGATTAATAATGTTGTGAAATGATGTGTGCACTGAATGATTCTTTGCACCAATACTCAAAAAACTACTTAGTCATATG
dot-bracket secondary structure
....(((((((((....(((.(((..((.((.(((((..(((...)))..))))))).)).)))...)))...)))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATACTATGATTAATAATGTTGTGAAATGATGTGTGCACTGAATGATTCTTTGCACCAATACTCAAAAAACTACTTAGTCATATG
dot-bracket secondary structure
....(((((((((....(((.(((..((.((.(((((..(((...)))..))))))).)).)))...)))...)))))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
