ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTG miRNA* GGGCTTCTCTTTGTTGGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
TGATATTATAGTCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAACGACATGACCACTTCATGAAATATCTTGCCAAAGGAGAGTTGCCC
TGTTGCTGCTTTAGCTTAATATGTAATCTT
dot-bracket secondary structure
)(((......)))..((((((((.((((.(((((((..((((((.(((((((((.....(((((.....))))).....))))))))).))))))..))))
))).)))).))).)))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGATATTATAGTCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAACGACATGACCACTTCATGAAATATCTTGCCAAAGGAGAGTTGCCC
TGTTGCTGCTTTAGCTTAATATGTAATCTT
dot-bracket secondary structure
)(((......)))..((((((((.((((.(((((((..((((((.(((((((((.....(((((.....))))).....))))))))).))))))..))))
))).)))).))).)))))............
SIMILARITIES| miRBase pvu-MIR399a: 2.0E-67 PMRD pvu-miR399a: 2.0E-67 microPC miR399: 3.0E-26 | UniProt no hits RFAM 9mir-399: 1.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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