ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
ATTCTATCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCTGTTTTTGCGCGAAATGGTGGAGTGGTTGCCGGCGGCGAATTGGATCCCGCC
TTGCATCAACTGAATCGGAGGCCGCAGTGAAGGTTTG
dot-bracket secondary structure
...((.((((..((((((((((.(((((.((((((((((.(((((.((....(((((.((...((((((.....)))))).)))))))..)).))))).)
))))))))).))))).)))))))))))))).))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTCTATCACTGTGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCTGTTTTTGCGCGAAATGGTGGAGTGGTTGCCGGCGGCGAATTGGATCCCGCC
TTGCATCAACTGAATCGGAGGCCGCAGTGAAGGTTTG
dot-bracket secondary structure
...((.((((..((((((((((.(((((.((((((((((.(((((.((....(((((.((...((((((.....)))))).)))))))..)).))))).)
))))))))).))))).)))))))))))))).))....
SIMILARITIES| miRBase gma-MIR168: 4e-47 PMRD gma-miR168: 4e-47 microPC miR168: 1e-44 | UniProt no hits RFAM MIR168: 2e-18 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST046663) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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