ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
CGGCTAAAGGAGTGGAGCTCCTTGAAGTCCAATAGAGGATCTTGATGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATAAGCAGAGATTATA
ATTTTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTTGTATTAGATCCTTGTTTGGATTGAAGGGAGCTCTACATCTCTCTC
dot-bracket secondary structure
)......(((.((((((((((((..(((((((..((((((((((..((((((...(((((.(((((.((((....((((((.(((((...(((((......
.))))).))))).))))))....)))).))))).)))))..))))))..))..))))))))..)))))))..)))))))))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGCTAAAGGAGTGGAGCTCCTTGAAGTCCAATAGAGGATCTTGATGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATAAGCAGAGATTATA
ATTTTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTTGTATTAGATCCTTGTTTGGATTGAAGGGAGCTCTACATCTCTCTC
dot-bracket secondary structure
)......(((.((((((((((((..(((((((..((((((((((..((((((...(((((.(((((.((((....((((((.(((((...(((((......
.))))).))))).))))))....)))).))))).)))))..))))))..))..))))))))..)))))))..)))))))))))).))).....
SIMILARITIES| miRBase rco-MIR159: 2.0E-99 PMRD vvi-miR159c: 2.0E-34 microPC miR159: 1.0E-94 | UniProt no hits RFAM 9MIR159: 3.0E-105 | most similar mature miRNAs |
Identical with: miR319 from microPC (MNEST044913), miR159 from microPC , miR319 from microPC , rco-MIR159 from miRBase , miR159 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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