ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR3512
source: miRNEST
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAAATGATGATAAATAGCC miRNA* CTTTTTATCATATTTATAAA mismatches: 4 bulges: 1 |
pre-miRNA
TTACTTTTGTAAATTTTGATTCCTTTTTATCATATTTATAAAATGACTAGATTTCTTTTTTTTTTTTTCTTTCCTTTTGCTTGGCTTTGGAGAAACAAAA
CAGTACTGCTCAAAGTTTCTCCACTGATGAATGTCAATAGACAAATAAAAGAAGGATGTAAATGACAATCTGAAGCTTCAATATCCACGAAATTACAACT
TTTTCCATGCCAAAAAGAATTATTTTTTACACTCCCATCAATCCCCAATCCATGAGGTAAAGGAAAAGAAAAGAAAAGGTCTAATACTTTGCAAATGATG
ATAAATAGCCAGTCTTTTTTACCACTTTA
dot-bracket secondary structure
........(((((....((((.((.((((((((((((.((((.((..(((((((.(((((((((((((((((((((.((.((((...(((((((((....
.(((...)))....))))))))).(((((..((((....))))..........(((((((((.((.(((.((.((.(((.........))).)).)).((
((((.......)))))).))).)).)))))).))))))))....))))..)).)))).))))))))))))))))).))))))).)).)))).)))).)))
))))).))..))))...))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTACTTTTGTAAATTTTGATTCCTTTTTATCATATTTATAAAATGACTAGATTTCTTTTTTTTTTTTTCTTTCCTTTTGCTTGGCTTTGGAGAAACAAAA
CAGTACTGCTCAAAGTTTCTCCACTGATGAATGTCAATAGACAAATAAAAGAAGGATGTAAATGACAATCTGAAGCTTCAATATCCACGAAATTACAACT
TTTTCCATGCCAAAAAGAATTATTTTTTACACTCCCATCAATCCCCAATCCATGAGGTAAAGGAAAAGAAAAGAAAAGGTCTAATACTTTGCAAATGATG
ATAAATAGCCAGTCTTTTTTACCACTTTA
dot-bracket secondary structure
........(((((....((((.((.((((((((((((.((((.((..(((((((.(((((((((((((((((((((.((.((((...(((((((((....
.(((...)))....))))))))).(((((..((((....))))..........(((((((((.((.(((.((.((.(((.........))).)).)).((
((((.......)))))).))).)).)))))).))))))))....))))..)).)))).))))))))))))))))).))))))).)).)))).)))).)))
))))).))..))))...))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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