ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: MIR319
source: miRNEST
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCCT miRNA* AGAGCTTTCTTCAGTCCAAAC mismatches: 1 bulges: 0 |
pre-miRNA
TAAGAAAAAAGAAGAGAGCTTTCTTCAGTCCAAACATGGGTGGCAGTAGGATTCAATTAGCTTCCGACTCATTCATCCAAATGCTGAGATGAGATGACGAT
GAACCCGGCCTTGATGACTAATGAACACTGTCTCAGTAACTGAGTGAATGATGCGGGAGACAAGTTGGATCTTAAGCTTCCTGTACTTGGACTGAAGGGA
GCTCCCTTTTTAACCTT
dot-bracket secondary structure
).......((((((.((((((((((((((((((..(((((.(((..((((((((((((..((((((..((((((((.((..(((((((((...........
.............................)))))))))..)).))))))))..))))))...)))))))))))).))).)))))..))))))))))))))
)))).))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAGAAAAAAGAAGAGAGCTTTCTTCAGTCCAAACATGGGTGGCAGTAGGATTCAATTAGCTTCCGACTCATTCATCCAAATGCTGAGATGAGATGACGAT
GAACCCGGCCTTGATGACTAATGAACACTGTCTCAGTAACTGAGTGAATGATGCGGGAGACAAGTTGGATCTTAAGCTTCCTGTACTTGGACTGAAGGGA
GCTCCCTTTTTAACCTT
dot-bracket secondary structure
).......((((((.((((((((((((((((((..(((((.(((..((((((((((((..((((((..((((((((.((..(((((((((...........
.............................)))))))))..)).))))))))..))))))...)))))))))))).))).)))))..))))))))))))))
)))).))))))......
SIMILARITIES| miRBase rco-MIR319a: 4.0E-30 PMRD ptc-miR319a: 9.0E-28 microPC miR319: 6.0E-109 | UniProt no hits RFAM 9MIR159: 7.0E-29 | most similar mature miRNAs |
Identical with: miR319 from microPC (MNEST046587), miR159 from microPC , miR319 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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