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ABOUT THIS RECORD

ID: MNEST008941
species: Ipomoea nil
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCCCT

miRNA*
 AGAGCTTTCTTCAGTCCAAAC

mismatches: 1
bulges: 0
View larger
pre-miRNA
 AAGAAAAAAGAAGAGAGCTTTCTTCAGTCCAAACATGGGTGGCAGTAGGATTCAATTAGCTTCCGACTCATTCATCCAAATGCTGAGATGAGATGACGAT
GAACCCGGCCTTGATGACTAATGAACACTGTCTCAGTAACTGAGTGAATGATGCGGGAGACAAGTTGGATCTTAAGCTTCCTGTACTTGGACTGAAGGGA
GCTCCCTTTTTAACCTT

dot-bracket secondary structure
.......((((((.((((((((((((((((((..(((((.(((..((((((((((((..((((((..((((((((.((..(((((((((...........
.............................)))))))))..)).))))))))..))))))...)))))))))))).))).)))))..))))))))))))))
)))).))))))......


SIMILARITIES
miRBase rco-MIR319a: 4e-30

PMRD ptc-miR319a: 9e-28

microPC miR319: 6e-109		UniProt no hits

RFAM MIR159: 7e-29		most similar mature miRNAs

Identical with: miR319 from microPC (MNEST046587)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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