miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST008943
species: Ipomoea nil
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCGAGTTGTCCTTGGCTACA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TACATAATCTCATCAATGGCCTTGCATGTTGGCGCAGGAAGCAGGTGGATGCAGCCAAGGATGACTTGCCGGCCGGTGAACTCTTCCTCCTATTGCGGCG
GACCCAACCATATATCCACCGCTCCGTACACTCTCAGGGTGACGAAAAGTTTGTAAGTTGGCGAGTTGTCCTTGGCTACATCTTCCTGTCTGCCCTTCAA
GCCAGGCTTTGGGTGACATATATACATA

dot-bracket secondary structure
......((.(((((...(((((.((.((..((.((((...(((((.(((((.(((((((((((((((((((((..(((((((.(((.((.(((.((((.(
((............))).))))...))).((((...)))))).))).)))))))..))))))))))))))))))))).))))).)))))))))))..)).
)).)))))...))))).)).........


SIMILARITIES
miRBase osa-MIR169p: 0.0000000008

PMRD osa-miRf11416-akr: 0.0000000008

microPC miR169: 4e-67		UniProt no hits

RFAM MIR169_2: 0.00000001		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST046552)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;