ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 2 bulges: 0 |
pre-miRNA
ATACGTTGTCGTGTGTTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTATCGCCGCGCCGGCGGCTGAGCGAGCACGGTTGCGTCGTCGTCT
CCGGCGAATTTAGCTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATTGTTTGTTGTCTC
dot-bracket secondary structure
(((((....)))))((((((.((((.((((.(((((.((((((((((.(((((.(((......((((((.(((...(((((((....))).)))).))).
))))))....))).))))).)))))))))).))))).)))).)))).)))))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATACGTTGTCGTGTGTTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTATCGCCGCGCCGGCGGCTGAGCGAGCACGGTTGCGTCGTCGTCT
CCGGCGAATTTAGCTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATTGTTTGTTGTCTC
dot-bracket secondary structure
(((((....)))))((((((.((((.((((.(((((.((((((((((.(((((.(((......((((((.(((...(((((((....))).)))).))).
))))))....))).))))).)))))))))).))))).)))).)))).)))))).............
SIMILARITIES| miRBase crt-MIR168: 0.00000000000004 PMRD rco-miR168: 0.00000000000004 microPC miR168: 2e-52 | UniProt no hits RFAM MIR168: 0.0000000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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