ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
GTGTTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTATCGCCGCGCCGGCGGCTGAGCGAGCACGGTTGCGTCGTCGTCTCCGGCGAATTTA
GCTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATT
dot-bracket secondary structure
..((((((.((((.((((.(((((.((((((((((.(((((.(((......((((((.(((...(((((((....))).)))).))).))))))....))
).))))).)))))))))).))))).)))).)))).)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGTTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTATCGCCGCGCCGGCGGCTGAGCGAGCACGGTTGCGTCGTCGTCTCCGGCGAATTTA
GCTCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATT
dot-bracket secondary structure
..((((((.((((.((((.(((((.((((((((((.(((((.(((......((((((.(((...(((((((....))).)))).))).))))))....))
).))))).)))))))))).))))).)))).)))).)))))).
SIMILARITIES| miRBase crt-MIR168: 0.00000000000003 PMRD rco-miR168: 0.00000000000003 microPC miR168: 2e-52 | UniProt no hits RFAM MIR168: 0.0000000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
