ABOUT THIS RECORDspecies: Fundulus heteroclitus
miRNA family: miR-1612
source: miRNEST
Taxonomy by NCBI:
Fundulus heteroclitus Fundulus Fundulidae Cyprinodontoidei Cyprinodontiformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGGAAGAGGAGCTGACTGC miRNA* GGTCATCTTCATCCTCGGC mismatches: 3 bulges: 2 |
pre-miRNA
GCCAACCATGGATCGGGAGGAGGAGGAAGAGGAGCTGACTGCCAAGGCAGCACCAAAGGACGTGGACGTGTTGACGTCCATGTGCTGCCTGGGTTACCTG
TCCAGCATCAGCCTCCTCGTGGCCGTATGCGTCGGCATGTACGTCCGCTGGGAGGTGACGGACGAACCCATGATCCTGGTCATCTTCATCCTCGGCCTCT
TCGTCCTGGGAATC
dot-bracket secondary structure
.....((..((((.((((((..(((((.(((((..((((((.(((((((((((........((((((((....)))))))))))))))))(((((....(
(((....(((.((((((.((((.(((((((....)))..)))).)))).))))))))).)))).))))).))....))))))))))).)))))..)))))
).))))..))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCAACCATGGATCGGGAGGAGGAGGAAGAGGAGCTGACTGCCAAGGCAGCACCAAAGGACGTGGACGTGTTGACGTCCATGTGCTGCCTGGGTTACCTG
TCCAGCATCAGCCTCCTCGTGGCCGTATGCGTCGGCATGTACGTCCGCTGGGAGGTGACGGACGAACCCATGATCCTGGTCATCTTCATCCTCGGCCTCT
TCGTCCTGGGAATC
dot-bracket secondary structure
.....((..((((.((((((..(((((.(((((..((((((.(((((((((((........((((((((....)))))))))))))))))(((((....(
(((....(((.((((((.((((.(((((((....)))..)))).)))).))))))))).)))).))))).))....))))))))))).)))))..)))))
).))))..))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q1LUD1|T168A_DANRE: 0.000000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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