ABOUT THIS RECORDspecies: Sparus aurata
miRNA family: mir-202
source: miRNEST
Taxonomy by NCBI:
Sparus aurata Sparus Sparidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTATGCATATACCTTTTT miRNA* AGAGGCATAGGGCATGGGAAAA mismatches: 2 bulges: 1 |
pre-miRNA
TCTTTGCACTCGCTGTTCCTTTTTCCTATGCATATACCTTTTTCAGATGTAACTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCTGCAGAGGTATT
dot-bracket secondary structure
)...(((.(((((.(((((.(((((((((((.(((.(((((((.((.......)).))))))).)))..))))))))))).))))).)).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTTTGCACTCGCTGTTCCTTTTTCCTATGCATATACCTTTTTCAGATGTAACTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCTGCAGAGGTATT
dot-bracket secondary structure
)...(((.(((((.(((((.(((((((((((.(((.(((((((.((.......)).))))))).)))..))))))))))).))))).)).))))))..
SIMILARITIES| miRBase fru-mir-202: 2.0E-33 PMRD no hits microPC no hits | UniProt no hits RFAM 2mir-202: 5.0E-31 | most similar mature miRNAs |
Identical with: tni-mir-202 from miRBase (MNEST034777), fru-mir-202 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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