ABOUT THIS RECORDspecies: Pongo abelii
miRNA family: miR-1285
source: miRNEST
Taxonomy by NCBI:
Pongo abelii Pongo Ponginae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGCAACAGAGCGAGACTC miRNA* GGATTGCTTAAGCCCAGGA mismatches: 4 bulges: 2 |
pre-miRNA
GTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAATAGCCAGGCATGGTAGTGCACAACTGTAGTCCCAGC
TACTTGGGAGCCTGAGAGAGGAGGATTGCTTAAGCCCAGGATTTCAAGG
dot-bracket secondary structure
)..........(((((((....((((((..((((.(((((......................((.((((..((.((.(((((.....))))).)).)).))
)).)).......)))))..))))..))))))..))))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAATAGCCAGGCATGGTAGTGCACAACTGTAGTCCCAGC
TACTTGGGAGCCTGAGAGAGGAGGATTGCTTAAGCCCAGGATTTCAAGG
dot-bracket secondary structure
)..........(((((((....((((((..((((.(((((......................((.((((..((.((.(((((.....))))).)).)).))
)).)).......)))))..))))..))))))..))))))).........
SIMILARITIES| miRBase ssc-mir-1285: 7.0E-6 PMRD no hits microPC no hits | UniProt no hits RFAM PMetazoa_SRP: 2.0E-16 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
