ABOUT THIS RECORDspecies: Pongo abelii
miRNA family: mir-548
source: miRNEST
Taxonomy by NCBI:
Pongo abelii Pongo Ponginae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTGGTGCAAAAGTAATTGCT miRNA* CAATTACTTTCACACCAATGT mismatches: 3 bulges: 0 |
pre-miRNA
TATTAGGTTGGTGCAAAAGTAATTGCTGTTTTTGCCATTAAAAGTAATGGCCACCCGCGTCCTAATGTAGGCCATGCTGCAATTACTTTCACACCAATGT
AAT
dot-bracket secondary structure
.((((.(((((((..(((((((((((.((....(((((((....))))))).))..((((((((...))))..)))).)))))))))))..))))))).)
)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTAGGTTGGTGCAAAAGTAATTGCTGTTTTTGCCATTAAAAGTAATGGCCACCCGCGTCCTAATGTAGGCCATGCTGCAATTACTTTCACACCAATGT
AAT
dot-bracket secondary structure
.((((.(((((((..(((((((((((.((....(((((((....))))))).))..((((((((...))))..)))).)))))))))))..))))))).)
)))
SIMILARITIES| miRBase hsa-mir-548i-1: 6e-18 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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