ABOUT THIS RECORDspecies: Pongo abelii
miRNA family: mir-1268
source: miRNEST
Taxonomy by NCBI:
Pongo abelii Pongo Ponginae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGGCGTGGTGGTGGGCACCT miRNA* GTGGCTGACACCTACGATCCGAG mismatches: 3 bulges: 2 |
pre-miRNA
GGATAATATTCGGCTGGGGGTGGTGGCTGACACCTACGATCCGAGCACTTTGGGGGGCCAAGGCAGGGGGATCACAAGGTCAGGAGTTCAAGACCAGCCT
GGCCAACACAGTGAAACTCCATCTCTGCTAAAAATACAAAACAAATCAGCCGGGCGTGGTGGTGGGCACCTGTAGTCCCAGCTACTTGGG
dot-bracket secondary structure
...........((((((((..((((.(((.((((.(((.((((.((..((((.........((((((((((((((..(((((((.(((...)))...)))
))))......))))...)))..)))))))............))))...))))))))))))).))).)))).....)))))))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGATAATATTCGGCTGGGGGTGGTGGCTGACACCTACGATCCGAGCACTTTGGGGGGCCAAGGCAGGGGGATCACAAGGTCAGGAGTTCAAGACCAGCCT
GGCCAACACAGTGAAACTCCATCTCTGCTAAAAATACAAAACAAATCAGCCGGGCGTGGTGGTGGGCACCTGTAGTCCCAGCTACTTGGG
dot-bracket secondary structure
...........((((((((..((((.(((.((((.(((.((((.((..((((.........((((((((((((((..(((((((.(((...)))...)))
))))......))))...)))..)))))))............))))...))))))))))))).))).)))).....)))))))).......
SIMILARITIES| miRBase ppy-mir-1268: 0.0000000000007 PMRD no hits microPC no hits | UniProt sp|Q96N38|ZN714_HUMAN: 0.0000000002 RFAM Metazoa_SRP: 4e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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