ABOUT THIS RECORDspecies: Acropora palmata
miRNA family: miR-1603
source: miRNEST
Taxonomy by NCBI:
Acropora palmata Acropora Acroporidae Astrocoeniina Scleractinia Hexacorallia Anthozoa Cnidaria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTTTTGTTTTGTGTTTTTG miRNA* AAAACAAAATTTCACGACATCT mismatches: 5 bulges: 1 |
pre-miRNA
AGAGAGTGACCAAAAACAAAATTTCACGACATCTGCCAACAGGGGTCTTCTTTTTTGTTCTCTCAATATCTTTAGAGTGAAATTGAAATGAGGTTCGTCA
TAACCAAAATCCATCTTGATTAAGGATTGCTGCCTACATGGCTGCCATGTTTCAATTTTGTTTTGTTTTGTTTTGTGTTTTTGGGTGATCTC
dot-bracket secondary structure
.((((....(((((((((.((...((.((((...((.((((((((......))))))))((((.((....)).)))).((((((((((((.((((.....
.))))..(((((...........)))))((.(((.....))).))..))))))))))))))..)))).))..)).)))))))))....))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGAGAGTGACCAAAAACAAAATTTCACGACATCTGCCAACAGGGGTCTTCTTTTTTGTTCTCTCAATATCTTTAGAGTGAAATTGAAATGAGGTTCGTCA
TAACCAAAATCCATCTTGATTAAGGATTGCTGCCTACATGGCTGCCATGTTTCAATTTTGTTTTGTTTTGTTTTGTGTTTTTGGGTGATCTC
dot-bracket secondary structure
.((((....(((((((((.((...((.((((...((.((((((((......))))))))((((.((....)).)))).((((((((((((.((((.....
.))))..(((((...........)))))((.(((.....))).))..))))))))))))))..)))).))..)).)))))))))....))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
