ABOUT THIS RECORDspecies: Ursus americanus
miRNA family: mir-1
source: miRNEST
Taxonomy by NCBI:
Ursus americanus Ursus Ursidae Caniformia Carnivora Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGT miRNA* ATACTTCTTTATGTACCCATA mismatches: 1 bulges: 1 |
pre-miRNA
CTTAGTAAAACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGCAATAAAC
dot-bracket secondary structure
).........((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).))))))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTAGTAAAACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGCAATAAAC
dot-bracket secondary structure
).........((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).))))))........
SIMILARITIES| miRBase hsa-mir-1-2: 5.0E-43 PMRD no hits microPC no hits | UniProt no hits RFAM 1mir-1: 3.0E-32 | most similar mature miRNAs |
Identical with: ptr-mir-1-2 from miRBase (MNEST030138), cfa-mir-1-2 from miRBase , bta-mir-1-2 from miRBase , ppa-mir-1 from miRBase , hsa-mir-1-2 from miRBase , eca-mir-1 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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