ABOUT THIS RECORDspecies: Artemia franciscana
miRNA family: miR-2345
source: miRNEST
Taxonomy by NCBI:
Artemia franciscana Artemia Artemiidae Anostraca Sarsostraca Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGTGTGTTTTCTTCTTTCT miRNA* CGAGAAGAGGTAATGAAAGCG mismatches: 5 bulges: 0 |
pre-miRNA
TAAAAATAACGTCGAGAAGAGGTAATGAAAGCGAAGCTGACGAACTTGATAAAAAAGGAGCTACATCTTCCAGCAAGAAAACTTATGATTATCCGACCAA
ATTGAACTACCTGTTTCGAGATGCTCGCTTTTTTCTGATCAAAAGTAATAATCAGGAGAATATCGATTTGGCAATGTCGCTTGTGTGTTTTCTTCTTTCT
GTTTTCTGC
dot-bracket secondary structure
.......((((..(((((((((..(((.((((((.(((((.....((((((.(((((((((...(((((..((((.........................
...........))))..))))))))).)))))(((((((...........)))))))...)))))).)))))....)))))).)))..)))))))))..)
)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TAAAAATAACGTCGAGAAGAGGTAATGAAAGCGAAGCTGACGAACTTGATAAAAAAGGAGCTACATCTTCCAGCAAGAAAACTTATGATTATCCGACCAA
ATTGAACTACCTGTTTCGAGATGCTCGCTTTTTTCTGATCAAAAGTAATAATCAGGAGAATATCGATTTGGCAATGTCGCTTGTGTGTTTTCTTCTTTCT
GTTTTCTGC
dot-bracket secondary structure
.......((((..(((((((((..(((.((((((.(((((.....((((((.(((((((((...(((((..((((.........................
...........))))..))))))))).)))))(((((((...........)))))))...)))))).)))))....)))))).)))..)))))))))..)
)))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q96MU7|YTDC1_HUMAN: 0.0001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
