ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: miR-2840
source: miRNEST
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGAATTGGAAGAAGAGGAA miRNA* CTTCTTCTCCCATTCCTACT mismatches: 3 bulges: 1 |
pre-miRNA
GGCCGGGGATCGGAATTGGAAGAAGAGGAAGTTGTGATGGACGAATCTCCATCTCATCATGCATCCCATTCATCGCCTTCTTCTTCTCCCATTCCTACTC
CTCCT
dot-bracket secondary structure
....(((((..(((((.(((.((((((((((.((.((((((......))))))....)).((............))))))))))))))).)))))...))
)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCCGGGGATCGGAATTGGAAGAAGAGGAAGTTGTGATGGACGAATCTCCATCTCATCATGCATCCCATTCATCGCCTTCTTCTTCTCCCATTCCTACTC
CTCCT
dot-bracket secondary structure
....(((((..(((((.(((.((((((((((.((.((((((......))))))....)).((............))))))))))))))).)))))...))
)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
