ABOUT THIS RECORDspecies: Osmerus mordax
miRNA family: miR-138
source: miRNEST
Taxonomy by NCBI:
Osmerus mordax Osmerus Osmerini Osmerinae Osmeridae Osmeroidea Osmeroidei Osmeriformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTACTTCCCAACACCAGGTT miRNA* AGCTGGTGTTGTGAATCAGACCG mismatches: 5 bulges: 1 |
pre-miRNA
TGCTGGCATGGTAGGGCGAGACAGCTGGTGTTGTGAATCAGACCGCCACAGTGCAAGGACCGGCTACTTCCCAACACCAGGTTCTCACCCTTACCCCTGA
CT
dot-bracket secondary structure
....((((.((.((((.((((...(((((((((.(((..((.((.((.........))...))))..))).)))))))))..)))).))))...)).)).
))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCTGGCATGGTAGGGCGAGACAGCTGGTGTTGTGAATCAGACCGCCACAGTGCAAGGACCGGCTACTTCCCAACACCAGGTTCTCACCCTTACCCCTGA
CT
dot-bracket secondary structure
....((((.((.((((.((((...(((((((((.(((..((.((.((.........))...))))..))).)))))))))..)))).))))...)).)).
))
SIMILARITIES| miRBase mmu-mir-138-1: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-138: 1e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
