ABOUT THIS RECORDspecies: Squalus acanthias
miRNA family: mir-762
source: miRNEST
Taxonomy by NCBI:
Squalus acanthias Squalus Squalidae Squaloidei Squaliformes Hypnosqualea Squalea Neoselachii Elasmobranchii Chondrichthyes Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGGCCGGGGCCGGGGCCGGC miRNA* CGGCCCAGGACACGGCCACCGC mismatches: 4 bulges: 1 |
pre-miRNA
TGGCAGCCGAGCCGGCCCAGGACACGGCCACCGCCTCCAGCTTCCAACACTTTGGGCTGCGCCACTTCCACCTCGACCTGCGGGTGGATTTCGCCCAGCG
GCAGCTGCAGGGCCGCGCGGCCTTGGAGCTGACCTGCCTGCGGGCCGGGGCCGGGGCCGGGGCCGGCGACCACCGG
dot-bracket secondary structure
(((...))).((((((((.((...(((((.((((((.((((..((((....))))((((.((....((((((.((.....))))))))....)).))))(
((((((.(((((((....))))))).))))).)).).))).))).))))))))...)).)))))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGCAGCCGAGCCGGCCCAGGACACGGCCACCGCCTCCAGCTTCCAACACTTTGGGCTGCGCCACTTCCACCTCGACCTGCGGGTGGATTTCGCCCAGCG
GCAGCTGCAGGGCCGCGCGGCCTTGGAGCTGACCTGCCTGCGGGCCGGGGCCGGGGCCGGGGCCGGCGACCACCGG
dot-bracket secondary structure
(((...))).((((((((.((...(((((.((((((.((((..((((....))))((((.((....((((((.((.....))))))))....)).))))(
((((((.(((((((....))))))).))))).)).).))).))).))))))))...)).)))))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O09175|AMPB_RAT: 0.0002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
