ABOUT THIS RECORDspecies: Ambystoma tigrinum tigrinum
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Ambystoma tigrinum tigrinum Ambystoma tigrinum Ambystoma Ambystomatidae Salamandroidea Caudata Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGCTTCTGCTGATGCTGCT miRNA* TGGCCAGCGGCAGGAGATCAA mismatches: 4 bulges: 2 |
pre-miRNA
ATCCCAACTTTAATGCTTCTGCTGATGCTGCTGCCCTCGACAAGGCCATCAAAGAAAAAGGTGTGAATAAAGGCATCATTATAGACATTTTGACCAAAAG
AAGCAATGGCCAGCGGCAGGAGATCAAAGCTGCAT
dot-bracket secondary structure
....((.((((.((.(((((((((..((((.(((..((.....((...((((((..((.(((((........))))).)).......))))))))....)
).))).))))...))))))))))).)))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCCCAACTTTAATGCTTCTGCTGATGCTGCTGCCCTCGACAAGGCCATCAAAGAAAAAGGTGTGAATAAAGGCATCATTATAGACATTTTGACCAAAAG
AAGCAATGGCCAGCGGCAGGAGATCAAAGCTGCAT
dot-bracket secondary structure
....((.((((.((.(((((((((..((((.(((..((.....((...((((((..((.(((((........))))).)).......))))))))....)
).))).))))...))))))))))).)))).))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P07150|ANXA1_RAT: 0.0002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
