ABOUT THIS RECORDspecies: Cavia porcellus
miRNA family: mir-154
source: miRNEST
Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTTACCCAAGCAACTTTGC miRNA* GAATGTTGCTCGGTGAACCCCT mismatches: 5 bulges: 1 |
pre-miRNA
CTCTCCATGGTACCCGGAGAGAGGTTACCCAAGCAACTTTGCATCTGAACAACGAATGTTGCTCGGTGAACCCCTTTTCGGTATCGAAGTCCA
dot-bracket secondary structure
.......(((((((.((((((.((((..((.((((((((((...........)))).)))))).))..)))).))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCTCCATGGTACCCGGAGAGAGGTTACCCAAGCAACTTTGCATCTGAACAACGAATGTTGCTCGGTGAACCCCTTTTCGGTATCGAAGTCCA
dot-bracket secondary structure
.......(((((((.((((((.((((..((.((((((((((...........)))).)))))).))..)))).))))))))))))).......
SIMILARITIES| miRBase oar-mir-409: 4e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 5e-37 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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