ABOUT THIS RECORDspecies: Bos sp.
miRNA family: let-7
source: miRNEST
Taxonomy by NCBI:
Bos sp. Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGGTAGTAGGTTGCATAGT miRNA* TATACGACCTGCTGCCTTTC mismatches: 1 bulges: 1 |
pre-miRNA
CAAGAAAAAAATGGGTTCCTAGGAAGAGGTAGTAGGTTGCATAGTTTTCGGGCAGGGATTTTGCCCACAAGGAGGTAACTATACGACCTGCTGCCTTTCTT
AGGGCCTTATTATACCAC
dot-bracket secondary structure
)........((((((.(((((((((.(((((((((((((.((((((.((((((((.....)))))).......)).)))))).))))))))))))))))))
)))).)))))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAGAAAAAAATGGGTTCCTAGGAAGAGGTAGTAGGTTGCATAGTTTTCGGGCAGGGATTTTGCCCACAAGGAGGTAACTATACGACCTGCTGCCTTTCTT
AGGGCCTTATTATACCAC
dot-bracket secondary structure
)........((((((.(((((((((.(((((((((((((.((((((.((((((((.....)))))).......)).)))))).))))))))))))))))))
)))).)))))).......
SIMILARITIES| miRBase mmu-let-7d: 2.0E-45 PMRD no hits microPC no hits | UniProt no hits RFAM 7let-7: 4.0E-32 | most similar mature miRNAs |
Identical with: bta-let-7d from miRBase (MNEST033113) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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