ABOUT THIS RECORDspecies: Bos sp.
miRNA family: mir-29
source: miRNEST
Taxonomy by NCBI:
Bos sp. Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCGGT miRNA* CGATTTCTCCTGGTGTTCAGA mismatches: 3 bulges: 1 |
pre-miRNA
AACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTA
dot-bracket secondary structure
)..(((...(((((((((((...(((((((.(((...........))))))))))...)))))))))))...))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTA
dot-bracket secondary structure
)..(((...(((((((((((...(((((((.(((...........))))))))))...)))))))))))...))).
SIMILARITIES| miRBase eca-mir-29c: 3.0E-37 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-29: 4.0E-18 | most similar mature miRNAs |
Identical with: eca-mir-29c from miRBase (MNEST026973), ppy-mir-29c from miRBase , mml-mir-29c from miRBase , ssc-mir-29c from miRBase , ptr-mir-29c from miRBase , rno-mir-3556b from miRBase , cfa-mir-29c-1 from miRBase , cfa-mir-29c-2 from miRBase , bta-mir-29c from miRBase , rno-mir-29c from miRBase , mmu-mir-29c from miRBase , hsa-mir-29c from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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